This is the RMarkdown file for the FTICR results from the 3Soils experiment. Tables and figures for molecular results.
Run: 2020-04-21
Color palette used: treatments == viridis | | | | |—–|—–|—–| |field moist | #35b779ff| green |drought |#fde725ff | yellow |flood | #443a83ff | blue
domains with NOSC
unique in each treatment compared to all, including TZsaturation these are peaks that were uniquely added during a given treatment
peaks lost and gained
Relative abundance
NOSC for CPCRW
| tension | site | drought | field moist | saturation | time zero saturation |
|---|---|---|---|---|---|
| 1.5 kPa | CPCRW | -0.4615 | -0.4545 | -0.6207 | -0.5217 |
| 1.5 kPa | DWP | -0.5714 | -0.4000 | -0.4000 | -0.4000 |
| 1.5 kPa | SR | -0.7333 | -0.7586 | -0.6000 | -0.7500 |
| 50 kPa | CPCRW | -0.3750 | -0.3077 | -0.4615 | -0.3333 |
| 50 kPa | DWP | -0.4828 | -0.3478 | -0.3333 | -0.3636 |
| 50 kPa | SR | -0.6250 | -0.6667 | -0.7826 | -0.5578 |
not doing much with aromatic peaks, because it excludes many lignins and tannins that contain aromatic groups
aromatic peaks
#> [1] "50 kPa"
| site | Class | drought | field moist | saturation | time zero saturation |
|---|---|---|---|---|---|
| CPCRW | AminoSugar | 201 | 5 | 17 | 10 |
| CPCRW | Carb | 255 | 7 | 51 | 15 |
| CPCRW | Lipid | 148 | 38 | 152 | 120 |
| CPCRW | Protein | 511 | 79 | 352 | 180 |
| CPCRW | UnsatHC | 2 | 8 | 1 | 9 |
| CPCRW | ConHC | 138 | 136 | 150 | 247 |
| CPCRW | Lignin | 1391 | 1001 | 1168 | 1230 |
| CPCRW | Tannin | 229 | 93 | 118 | 120 |
| CPCRW | Other | 11 | 8 | 1 | 10 |
| CPCRW | total | 2886 | 1375 | 2010 | 1941 |
| DWP | AminoSugar | 34 | 18 | 23 | 254 |
| DWP | Carb | 68 | 2 | 24 | 273 |
| DWP | Lipid | 132 | 54 | 103 | 146 |
| DWP | Protein | 416 | 188 | 250 | 535 |
| DWP | UnsatHC | 4 | 3 | 8 | 15 |
| DWP | ConHC | 105 | 132 | 194 | 144 |
| DWP | Lignin | 1062 | 996 | 1072 | 1243 |
| DWP | Tannin | 78 | 105 | 150 | 187 |
| DWP | Other | 10 | 1 | 2 | 20 |
| DWP | total | 1909 | 1499 | 1826 | 2817 |
| SR | AminoSugar | 6 | 26 | 57 | 34 |
| SR | Carb | 5 | 18 | 11 | 2 |
| SR | Lipid | 133 | 176 | 228 | 108 |
| SR | Protein | 245 | 250 | 490 | 283 |
| SR | UnsatHC | 3 | 15 | 15 | 16 |
| SR | ConHC | 3 | 13 | 15 | 61 |
| SR | Lignin | 593 | 741 | 738 | 776 |
| SR | Tannin | 4 | 11 | 10 | 30 |
| SR | Other | 1 | 4 | 4 | 2 |
| SR | total | 993 | 1254 | 1568 | 1312 |
#> [1] "1.5 kPa"
| site | Class | drought | field moist | saturation | time zero saturation |
|---|---|---|---|---|---|
| CPCRW | AminoSugar | 129 | 13 | 21 | 36 |
| CPCRW | Carb | 181 | 22 | 27 | 15 |
| CPCRW | Lipid | 98 | 122 | 204 | 142 |
| CPCRW | Protein | 395 | 270 | 431 | 446 |
| CPCRW | UnsatHC | 3 | 15 | 13 | 14 |
| CPCRW | ConHC | 53 | 142 | 95 | 171 |
| CPCRW | Lignin | 854 | 1034 | 1029 | 981 |
| CPCRW | Tannin | 98 | 92 | 62 | 92 |
| CPCRW | Other | 27 | 8 | 10 | 6 |
| CPCRW | total | 1838 | 1718 | 1892 | 1903 |
| DWP | AminoSugar | 25 | 20 | 2 | 265 |
| DWP | Carb | 75 | 6 | 12 | 310 |
| DWP | Lipid | 114 | 106 | 70 | 122 |
| DWP | Protein | 324 | 248 | 143 | 511 |
| DWP | UnsatHC | 4 | 8 | 6 | 12 |
| DWP | ConHC | 35 | 152 | 151 | 55 |
| DWP | Lignin | 778 | 1029 | 744 | 900 |
| DWP | Tannin | 18 | 97 | 41 | 138 |
| DWP | Other | 14 | 6 | 2 | 29 |
| DWP | total | 1387 | 1672 | 1171 | 2342 |
| SR | AminoSugar | 20 | 53 | 16 | 45 |
| SR | Carb | 3 | 23 | 8 | 9 |
| SR | Lipid | 188 | 168 | 106 | 135 |
| SR | Protein | 301 | 428 | 115 | 376 |
| SR | UnsatHC | 11 | 11 | 19 | 17 |
| SR | ConHC | 25 | 13 | 26 | 32 |
| SR | Lignin | 581 | 617 | 518 | 531 |
| SR | Tannin | 11 | 10 | 10 | 9 |
| SR | Other | 3 | 5 | NA | 3 |
| SR | total | 1143 | 1328 | 818 | 1157 |
#> [1] "50 kPa"
| site | Class | drought | field moist | saturation |
|---|---|---|---|---|
| CPCRW | AminoSugar | 185 | NA | 2 |
| CPCRW | Carb | 202 | 1 | NA |
| CPCRW | Lipid | 20 | 1 | 20 |
| CPCRW | Protein | 182 | NA | 21 |
| CPCRW | UnsatHC | NA | 2 | NA |
| CPCRW | ConHC | 5 | 4 | 4 |
| CPCRW | Lignin | 214 | 9 | 23 |
| CPCRW | Tannin | 99 | NA | 5 |
| CPCRW | Other | 7 | NA | NA |
| DWP | AminoSugar | 4 | 2 | 2 |
| DWP | Carb | 6 | NA | NA |
| DWP | Lipid | 20 | NA | 10 |
| DWP | Protein | 68 | 7 | 4 |
| DWP | UnsatHC | NA | NA | 2 |
| DWP | ConHC | 6 | 5 | 57 |
| DWP | Lignin | 26 | 13 | 34 |
| DWP | Tannin | 1 | 2 | 32 |
| DWP | Other | 4 | NA | NA |
| SR | AminoSugar | NA | 10 | 19 |
| SR | Carb | 2 | 9 | 1 |
| SR | Lipid | 28 | 11 | 57 |
| SR | Protein | 9 | 12 | 116 |
| SR | UnsatHC | NA | 1 | 2 |
| SR | ConHC | NA | NA | 3 |
| SR | Lignin | 2 | 14 | 64 |
| SR | Tannin | NA | NA | 3 |
| SR | Other | NA | 2 | 2 |
#> [1] "1.5 kPa"
| site | Class | drought | field moist | saturation |
|---|---|---|---|---|
| CPCRW | AminoSugar | 108 | NA | 2 |
| CPCRW | Carb | 160 | 4 | 3 |
| CPCRW | Lipid | 8 | 5 | 65 |
| CPCRW | Protein | 71 | 4 | 42 |
| CPCRW | UnsatHC | NA | 7 | 3 |
| CPCRW | ConHC | 5 | 3 | 3 |
| CPCRW | Lignin | 67 | 42 | 74 |
| CPCRW | Tannin | 15 | 5 | NA |
| CPCRW | Other | 17 | NA | NA |
| DWP | AminoSugar | 7 | 6 | NA |
| DWP | Carb | 5 | NA | NA |
| DWP | Lipid | 23 | 11 | 3 |
| DWP | Protein | 37 | 9 | NA |
| DWP | UnsatHC | NA | 4 | 2 |
| DWP | ConHC | 4 | 29 | 26 |
| DWP | Lignin | 21 | 122 | 2 |
| DWP | Tannin | 1 | 34 | NA |
| DWP | Other | 6 | 4 | NA |
| SR | AminoSugar | NA | 11 | 3 |
| SR | Carb | NA | 15 | 1 |
| SR | Lipid | 51 | 16 | 3 |
| SR | Protein | 20 | 70 | 8 |
| SR | UnsatHC | NA | NA | 4 |
| SR | ConHC | 7 | 10 | 8 |
| SR | Lignin | 49 | 82 | 18 |
| SR | Tannin | 4 | 5 | 1 |
| SR | Other | 1 | 4 | NA |
#> [1] "50 kPa"
| site | Class | drought | field moist | saturation | time zero saturation |
|---|---|---|---|---|---|
| CPCRW | AminoSugar | 5.8 ± 0.74 * | 0.36 ± 0 | 0.77 ± 0.08 | 0.47 ± 0.06 |
| CPCRW | Carb | 7.97 ± 0.58 * | 0.51 ± 0 | 1.99 ± 0.65 | 0.51 ± 0.17 |
| CPCRW | Lipid | 5.33 ± 0.33 | 2.76 ± 0 * | 7.37 ± 0.26 * | 5.53 ± 0.51 |
| CPCRW | Protein | 18.01 ± 0.67 * | 5.75 ± 0 * | 17.37 ± 0.31 * | 8.73 ± 0.69 |
| CPCRW | UnsatHC | 0.06 ± 0.01 * | 0.58 ± 0 * | 0.05 ± 0 * | 0.38 ± 0.07 |
| CPCRW | ConHC | 4.62 ± 0.38 * | 9.89 ± 0 | 7.26 ± 0.46 * | 11.07 ± 1.54 |
| CPCRW | Lignin | 50.28 ± 0.82 * | 72.8 ± 0 * | 59.32 ± 0.71 * | 66.41 ± 1.05 |
| CPCRW | Tannin | 7.56 ± 0.56 | 6.76 ± 0 | 5.84 ± 0.04 | 6.56 ± 0.26 |
| CPCRW | Other | 0.37 ± 0.02 | 0.58 ± 0 | 0.05 ± 0 | 0.42 ± 0.12 |
| DWP | AminoSugar | 1.62 ± 0.16 * | 1.2 ± 0 * | 1.09 ± 0.14 * | 8.52 ± 0.81 |
| DWP | Carb | 3.4 ± 0.23 * | 0.13 ± 0 * | 1.26 ± 0.18 * | 9.37 ± 0.71 |
| DWP | Lipid | 6.72 ± 0.19 | 3.6 ± 0 | 4.98 ± 0.68 | 4.95 ± 0.6 |
| DWP | Protein | 21.71 ± 0.48 | 12.54 ± 0 * | 13.29 ± 1.35 * | 18.81 ± 0.33 |
| DWP | UnsatHC | 0.19 ± 0.02 * | 0.2 ± 0 * | 0.38 ± 0.07 | 0.51 ± 0.03 |
| DWP | ConHC | 5.07 ± 0.56 | 8.81 ± 0 * | 10.45 ± 0.72 * | 4.87 ± 0.31 |
| DWP | Lignin | 56.83 ± 0.32 * | 66.44 ± 0 * | 60.45 ± 1.67 * | 45.65 ± 1.16 |
| DWP | Tannin | 3.95 ± 0.14 | 7 ± 0 | 8 ± 1.2 | 6.58 ± 0.05 |
| DWP | Other | 0.51 ± 0.02 | 0.07 ± 0 | 0.12 ± 0.01 | 0.73 ± 0.03 |
| SR | AminoSugar | 0.5 ± 0.11 * | 2.09 ± 0.11 | 3.4 ± 0.12 * | 2.13 ± 0.57 |
| SR | Carb | 0.51 ± 0 * | 1.11 ± 0.14 * | 0.61 ± 0.03 * | 0.14 ± 0.03 |
| SR | Lipid | 11.51 ± 1.93 | 13.35 ± 0.52 * | 14.41 ± 0.54 * | 8.19 ± 1.01 |
| SR | Protein | 21.26 ± 3.68 | 18.53 ± 1.62 | 31.9 ± 0.27 * | 20.61 ± 2.69 |
| SR | UnsatHC | 0.25 ± 0.03 * | 1.21 ± 0.06 | 0.91 ± 0.08 | 1.1 ± 0.23 |
| SR | ConHC | 0.32 ± 0.01 * | 0.93 ± 0.06 * | 0.96 ± 0.03 * | 3.95 ± 1.08 |
| SR | Lignin | 65.32 ± 5.84 | 61.8 ± 1.77 | 47.02 ± 0.7 * | 61.77 ± 3.38 |
| SR | Tannin | 0.37 ± 0.03 * | 0.72 ± 0.14 * | 0.56 ± 0.1 * | 1.99 ± 0.4 |
| SR | Other | 0.13 ± 0.02 | 0.25 ± 0.04 | 0.22 ± 0.05 | 0.16 ± 0.02 |
total = 100%
#> [1] "1.5 kPa"
| site | Class | drought | field moist | saturation | time zero saturation |
|---|---|---|---|---|---|
| CPCRW | AminoSugar | 6.03 ± 0.61 * | 0.65 ± 0.06 | 0.94 ± 0.13 | 1.72 ± 0.17 |
| CPCRW | Carb | 9.1 ± 0.74 * | 0.84 ± 0.28 | 1.18 ± 0.17 | 0.7 ± 0.09 |
| CPCRW | Lipid | 5.37 ± 0.19 * | 7.27 ± 0.43 | 10.88 ± 0.46 * | 7.73 ± 0.59 |
| CPCRW | Protein | 22.43 ± 1.1 | 17.16 ± 1.35 | 23.04 ± 0.78 | 22.04 ± 2.32 |
| CPCRW | UnsatHC | 0.14 ± 0.03 * | 0.67 ± 0.11 | 0.64 ± 0.02 | 0.62 ± 0.07 |
| CPCRW | ConHC | 2.59 ± 0.4 * | 7.63 ± 0.58 | 4.32 ± 0.86 | 6.64 ± 1.87 |
| CPCRW | Lignin | 48.02 ± 0.81 * | 60.41 ± 0.94 * | 55.51 ± 0.12 | 55.57 ± 1.94 |
| CPCRW | Tannin | 5.04 ± 0.5 | 5.07 ± 0.24 | 3.08 ± 0.33 * | 4.77 ± 0.31 |
| CPCRW | Other | 1.3 ± 0.08 | 0.38 ± 0.09 | 0.41 ± 0.08 | 0.27 ± 0.07 |
| DWP | AminoSugar | 1.55 ± 0.16 * | 1.07 ± 0.2 * | 0.16 ± 0.02 * | 8.94 ± 1.55 |
| DWP | Carb | 5.48 ± 0.43 * | 0.34 ± 0.03 * | 0.86 ± 0.3 * | 10.87 ± 2.15 |
| DWP | Lipid | 8.11 ± 0.64 | 6.16 ± 0.21 | 6.33 ± 0.86 | 7.45 ± 2.43 |
| DWP | Protein | 24.08 ± 0.89 | 14.32 ± 1.25 * | 12.03 ± 1.3 * | 26.79 ± 4.57 |
| DWP | UnsatHC | 0.27 ± 0.04 * | 0.41 ± 0.09 | 0.53 ± 0.08 | 0.59 ± 0.09 |
| DWP | ConHC | 1.94 ± 0.37 | 7.93 ± 1.55 * | 12.15 ± 1.42 * | 1.9 ± 0.33 |
| DWP | Lignin | 56.59 ± 1.27 * | 63.53 ± 1.02 * | 64.52 ± 1.7 * | 38.04 ± 2.26 |
| DWP | Tannin | 0.99 ± 0.16 * | 5.93 ± 0.17 | 3.24 ± 0.28 | 4.41 ± 1.19 |
| DWP | Other | 0.97 ± 0.03 | 0.32 ± 0.04 | 0.17 ± 0.04 | 1.01 ± 0.2 |
| SR | AminoSugar | 1.31 ± 0.36 * | 3.68 ± 0.46 | 1.87 ± 0.17 * | 3.73 ± 0.16 |
| SR | Carb | 0.25 ± 0.04 | 1.69 ± 0.44 * | 0.89 ± 0.08 | 0.7 ± 0.04 |
| SR | Lipid | 16.86 ± 0.61 * | 12.43 ± 0.25 | 12.89 ± 0.29 | 11.64 ± 0.14 |
| SR | Protein | 21.9 ± 3.95 * | 30.01 ± 3.06 | 13.45 ± 0.64 * | 33.57 ± 0.94 |
| SR | UnsatHC | 1.11 ± 0.21 | 0.9 ± 0.15 * | 2.21 ± 0.07 * | 1.47 ± 0.02 |
| SR | ConHC | 1.77 ± 0.58 | 0.91 ± 0.13 | 2.68 ± 0.67 | 2.56 ± 0.38 |
| SR | Lignin | 55.8 ± 4.48 | 49.36 ± 2.11 | 64.99 ± 0.75 * | 45.26 ± 1.34 |
| SR | Tannin | 1.18 ± 0.21 | 0.69 ± 0.17 | 1.02 ± 0.13 | 0.8 ± 0.09 |
| SR | Other | 0.34 ± 0.14 | 0.34 ± 0.07 | NA | 0.27 ± 0.04 |
total = 100% ## aromatic peaks
| treatment | 1.5 kPa CPCRW | 1.5 kPa DWP | 1.5 kPa SR | 50 kPa CPCRW | 50 kPa DWP | 50 kPa SR |
|---|---|---|---|---|---|---|
| drought | 1.53 ± 0.01 * | 1.27 ± 0.02 * | 1.17 ± 0.07 * | 1.53 ± 0.02 * | 1.33 ± 0.01 * | 0.94 ± 0.1 |
| field moist | 1.26 ± 0.02 | 1.21 ± 0.03 * | 1.28 ± 0.02 | 1.01 ± 0 * | 1.13 ± 0 * | 1.15 ± 0.02 |
| saturation | 1.29 ± 0.02 | 1.16 ± 0.04 * | 1.15 ± 0.03 * | 1.28 ± 0.03 * | 1.28 ± 0.04 * | 1.27 ± 0.01 |
| time zero saturation | 1.31 ± 0.04 | 1.6 ± 0.06 | 1.34 ± 0.01 | 1.15 ± 0.03 | 1.64 ± 0.02 | 1.15 ± 0.07 |
peaks lost and gained
| site | baseline | drought | field moist | saturation | time zero saturation |
|---|---|---|---|---|---|
| CPCRW | -0.3636 | -0.3529 | -0.3846 | -0.4211 | -0.4000 |
| DWP | -0.3200 | -0.4545 | -0.4444 | -0.4211 | -0.3871 |
| SR | -0.2963 | -0.3333 | -0.4444 | -0.4286 | -0.3750 |